Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs7740083 chr6:45274742 G/A 0.000138 177 16.22 16.1 12.2 KM Plot
PAAD rs77410495 chr11:125609936 C/T 0.0001 178 15.95 12.2 4.1 KM Plot
PAAD rs77448323 chr11:34774834 G/T 3.06E-6 177 15.67 11.13 3.67 KM Plot
PAAD rs77464064 chr1:227301610 C/T 3.2E-5 178 15.53 15.65 3.9 KM Plot
PAAD rs7752603 chr6:24437108 C/G 1.13E-9 178 15.55 15.27 2.2 KM Plot
PAAD rs77556804 chr8:72564562 A/G 7.36E-8 175 15.82 12.63 3.17 KM Plot
PAAD rs77599485 chr1:227352195 T/C 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs77703354 chr1:227370713 C/T 3.69E-5 177 15.53 15.43 3.9 KM Plot
PAAD rs77707831 chr7:20690776 A/G 1.9E-6 176 15.55 15.67 3.67 KM Plot
PAAD rs77755024 chr1:227357784 T/A 3.69E-5 177 15.53 15.43 3.9 KM Plot
PAAD rs7775504 chr6:170036309 G/T 2.58E-13 178 3.67 15.42 15.57 KM Plot
PAAD rs77761039 chr16:8744970 C/T 0.000157 178 15.6 15.5 4.93 KM Plot
PAAD rs77762169 chr1:227509201 C/T 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs77763467 chr2:70416473 G/C 0 178 15.33 18.43 1.03 KM Plot
PAAD rs77773331 chr7:154689217 C/A 1.27E-14 176 16.03 13.05 3.43 KM Plot